HL_8HFR_028
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8HFR_028 not in the Motif Atlas
- Homologous match to HL_8C3A_028
- Geometric discrepancy: 0.2108
- The information below is about HL_8C3A_028
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8HFR|1|1e|U|1267
8HFR|1|1e|G|1268
8HFR|1|1e|U|1269
8HFR|1|1e|A|1270
8HFR|1|1e|A|1271
8HFR|1|1e|C|1272
8HFR|1|1e|A|1273
8HFR|1|1e|A|1274
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain KM
- YEAST 60S ribosomal protein L12-A
- Chain Wg
- Ribosome assembly factor MRT4
- Chain rA
- Nucleolar GTP-binding protein 1
- Chain xd
- Ribosome biogenesis protein NSA2
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