HL_8HFR_063
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GAUUGUUCACC
- Length
- 11 nucleotides
- Bulged bases
- 8HFR|1|1e|U|2921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8HFR_063 not in the Motif Atlas
- Geometric match to HL_6GSK_218
- Geometric discrepancy: 0.3766
- The information below is about HL_6GSK_218
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8HFR|1|1e|G|2918
8HFR|1|1e|A|2919
8HFR|1|1e|U|2920
8HFR|1|1e|U|2921
8HFR|1|1e|G|2922
8HFR|1|1e|U|2923
8HFR|1|1e|U|2924
8HFR|1|1e|C|2925
8HFR|1|1e|A|2926
8HFR|1|1e|C|2927
8HFR|1|1e|C|2928
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L3
- Chain V5
- 60S ribosomal protein L23-A
- Chain rA
- Nucleolar GTP-binding protein 1
- Chain v9
- Nucleolar GTP-binding protein 2
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