HL_8HL2_059

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCCAGCAGCAG

Length

11 nucleotides

Bulged bases

8HL2|1|A23S|A|1210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_059 not in the Motif Atlas

Homologous match to HL_5D8H_001

Geometric discrepancy: 0.4988

The information below is about HL_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8HL2|1|A23S|C|1204
8HL2|1|A23S|C|1205
8HL2|1|A23S|C|1206
8HL2|1|A23S|A|1207
8HL2|1|A23S|G|1208
8HL2|1|A23S|C|1209
8HL2|1|A23S|A|1210
8HL2|1|A23S|G|1211
8HL2|1|A23S|C|1212
8HL2|1|A23S|A|1213
8HL2|1|A23S|G|1214

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AEFG

Elongation factor 2

Chain L40E

50S ribosomal protein L40E