HL_8HL2_069

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGUAACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_069 not in the Motif Atlas

Homologous match to HL_4V9F_039

Geometric discrepancy: 0.3143

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8HL2|1|A23S|C|1650
8HL2|1|A23S|G|1651
8HL2|1|A23S|U|1652
8HL2|1|A23S|A|1653
8HL2|1|A23S|A|1654
8HL2|1|A23S|C|1655
8HL2|1|A23S|G|1656

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L37A

50S ribosomal protein L37Ae