HL_8IP8_024

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8IP8|1|RB|C|962, 8IP8|1|RB|A|965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_024 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.1157

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8IP8|1|RB|C|961
8IP8|1|RB|C|962
8IP8|1|RB|U|963
8IP8|1|RB|C|964
8IP8|1|RB|A|965
8IP8|1|RB|G|966

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain IA

60S ribosomal protein uL15

Chain OB

60S ribosomal protein eL29

Chain WA

60S ribosomal protein eL42