HL_8IP8_047
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8IP8|1|RB|A|2132, 8IP8|1|RB|A|2133, 8IP8|1|RB|U|2134, 8IP8|1|RB|A|2138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_047 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.1396
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8IP8|1|RB|U|2129
8IP8|1|RB|U|2130
8IP8|1|RB|U|2131
8IP8|1|RB|A|2132
8IP8|1|RB|A|2133
8IP8|1|RB|U|2134
8IP8|1|RB|U|2135
8IP8|1|RB|A|2136
8IP8|1|RB|A|2137
8IP8|1|RB|A|2138
8IP8|1|RB|A|2139
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DA
- 60S ribosomal protein uL2
- Chain UA
- 60S ribosomal protein eL37
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