HL_8IP8_064

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8IP8|1|RB|G|2895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_064 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.0677

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8IP8|1|RB|A|2894
8IP8|1|RB|G|2895
8IP8|1|RB|C|2896
8IP8|1|RB|A|2897
8IP8|1|RB|G|2898
8IP8|1|RB|A|2899
8IP8|1|RB|A|2900
8IP8|1|RB|U|2901

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain FA

60S ribosomal protein uL6

Chain JB

60S ribosomal protein eL40