HL_8IP8_074
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAUUGCAGAAUCCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8IP8|1|SB|C|84, 8IP8|1|SB|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_074 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2388
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8IP8|1|SB|U|69
8IP8|1|SB|G|70
8IP8|1|SB|A|71
8IP8|1|SB|A|72
8IP8|1|SB|U|73
8IP8|1|SB|U|74
8IP8|1|SB|G|75
8IP8|1|SB|C|76
8IP8|1|SB|A|77
8IP8|1|SB|G|78
8IP8|1|SB|A|79
8IP8|1|SB|A|80
8IP8|1|SB|U|81
8IP8|1|SB|C|82
8IP8|1|SB|C|83
8IP8|1|SB|C|84
8IP8|1|SB|G|85
8IP8|1|SB|U|86
8IP8|1|SB|G|87
8IP8|1|SB|A|88
8IP8|1|SB|A|89
Current chains
- Chain SB
- 5.8S ribosomal RNA
Nearby chains
- Chain BB
- 60S ribosomal protein uL29
- Chain PA
- 60S ribosomal protein uL24
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain VA
- 60S ribosomal protein eL39
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