HL_8IP8_087

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

8IP8|1|aa|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_087 not in the Motif Atlas

Homologous match to HL_8P9A_199

Geometric discrepancy: 0.0733

The information below is about HL_8P9A_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8IP8|1|aa|C|397
8IP8|1|aa|C|398
8IP8|1|aa|U|399
8IP8|1|aa|G|400
8IP8|1|aa|A|401
8IP8|1|aa|G|402
8IP8|1|aa|A|403
8IP8|1|aa|A|404
8IP8|1|aa|A|405
8IP8|1|aa|C|406
8IP8|1|aa|G|407
8IP8|1|aa|G|408

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain gb

40S ribosomal protein eS6

Chain ja

40S ribosomal protein eS4