HL_8IP8_091

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUCUAAAUCCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_091 not in the Motif Atlas

Homologous match to HL_8P9A_203

Geometric discrepancy: 0.1271

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8IP8|1|aa|A|524
8IP8|1|aa|A|525
8IP8|1|aa|U|526
8IP8|1|aa|C|527
8IP8|1|aa|U|528
8IP8|1|aa|A|529
8IP8|1|aa|A|530
8IP8|1|aa|A|531
8IP8|1|aa|U|532
8IP8|1|aa|C|533
8IP8|1|aa|C|534
8IP8|1|aa|C|535
8IP8|1|aa|U|536

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain eb

40S ribosomal protein uS4