HL_8IP8_096

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_096 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.1055

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8IP8|1|aa|A|905
8IP8|1|aa|G|906
8IP8|1|aa|G|907
8IP8|1|aa|U|908
8IP8|1|aa|G|909
8IP8|1|aa|A|910
8IP8|1|aa|A|911
8IP8|1|aa|A|912
8IP8|1|aa|U|913
8IP8|1|aa|U|914

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain db

40S ribosomal protein eS26

Chain ka

40S ribosomal protein uS7

Chain na

40S ribosomal protein uS11