HL_8IP8_098
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8IP8|1|aa|U|1009
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_098 not in the Motif Atlas
- Homologous match to HL_8P9A_211
- Geometric discrepancy: 0.1326
- The information below is about HL_8P9A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8IP8|1|aa|G|1002
8IP8|1|aa|A|1003
8IP8|1|aa|U|1004
8IP8|1|aa|C|1005
8IP8|1|aa|A|1006
8IP8|1|aa|G|1007
8IP8|1|aa|A|1008
8IP8|1|aa|U|1009
8IP8|1|aa|A|1010
8IP8|1|aa|C|1011
8IP8|1|aa|C|1012
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain al
- mRNA
- Chain cl
- Transfer RNA; tRNA
- Chain db
- 40S ribosomal protein eS26
- Chain na
- 40S ribosomal protein uS11
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