HL_8IP9_005

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8IP9|1|aa|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_005 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.1714

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8IP9|1|aa|G|246
8IP9|1|aa|A|247
8IP9|1|aa|U|248
8IP9|1|aa|G|249
8IP9|1|aa|A|250
8IP9|1|aa|U|251
8IP9|1|aa|U|252
8IP9|1|aa|C|253

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ib

40S ribosomal protein uS17

Chain ja

40S ribosomal protein eS4