HL_8IP9_016

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCUCAAAG

Length

9 nucleotides

Bulged bases

8IP9|1|aa|G|771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_016 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1653

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8IP9|1|aa|U|770
8IP9|1|aa|G|771
8IP9|1|aa|C|772
8IP9|1|aa|U|773
8IP9|1|aa|C|774
8IP9|1|aa|A|775
8IP9|1|aa|A|776
8IP9|1|aa|A|777
8IP9|1|aa|G|778

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain eb

40S ribosomal protein uS4

Chain ja

40S ribosomal protein eS4