HL_8IP9_025
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8IP9|1|aa|A|1200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP9_025 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.0864
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8IP9|1|aa|G|1192
8IP9|1|aa|A|1193
8IP9|1|aa|C|1194
8IP9|1|aa|U|1195
8IP9|1|aa|C|1196
8IP9|1|aa|A|1197
8IP9|1|aa|A|1198
8IP9|1|aa|C|1199
8IP9|1|aa|A|1200
8IP9|1|aa|C|1201
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain cl
- Transfer RNA; tRNA
- Chain la
- 40S ribosomal protein uS9
- Chain ma
- 40S ribosomal protein uS10
- Chain wa
- 40S ribosomal protein uS14
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