HL_8IP9_026

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUGAGAGCU

Length

10 nucleotides

Bulged bases

8IP9|1|aa|G|1247, 8IP9|1|aa|G|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_026 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.2274

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8IP9|1|aa|A|1242
8IP9|1|aa|C|1243
8IP9|1|aa|U|1244
8IP9|1|aa|G|1245
8IP9|1|aa|A|1246
8IP9|1|aa|G|1247
8IP9|1|aa|A|1248
8IP9|1|aa|G|1249
8IP9|1|aa|C|1250
8IP9|1|aa|U|1251

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain sa

40S ribosomal protein uS19