HL_8IP9_028

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8IP9|1|aa|U|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_028 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.0966

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8IP9|1|aa|G|1313
8IP9|1|aa|U|1314
8IP9|1|aa|U|1315
8IP9|1|aa|A|1316
8IP9|1|aa|A|1317
8IP9|1|aa|U|1318
8IP9|1|aa|U|1319
8IP9|1|aa|C|1320

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain qa

40S ribosomal protein eS17