HL_8IPX_008

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8IPX|1|2|G|294, 8IPX|1|2|A|295, 8IPX|1|2|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPX_008 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1382

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8IPX|1|2|C|289
8IPX|1|2|U|290
8IPX|1|2|U|291
8IPX|1|2|G|292
8IPX|1|2|G|293
8IPX|1|2|G|294
8IPX|1|2|A|295
8IPX|1|2|A|296
8IPX|1|2|U|297
8IPX|1|2|G|298

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15