HL_8IPX_051
3D structure
- PDB id
- 8IPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8IPX|1|2|A|3642, 8IPX|1|2|A|3643, 8IPX|1|2|U|3644, 8IPX|1|2|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPX_051 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.1713
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8IPX|1|2|U|3639
8IPX|1|2|U|3640
8IPX|1|2|U|3641
8IPX|1|2|A|3642
8IPX|1|2|A|3643
8IPX|1|2|U|3644
8IPX|1|2|U|3645
8IPX|1|2|A|3646
8IPX|1|2|A|3647
8IPX|1|2|A|3648
8IPX|1|2|A|3649
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain M
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L8
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