HL_8K2B_009

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAGCAAAA

Length

10 nucleotides

Bulged bases

8K2B|1|L1|A|287, 8K2B|1|L1|A|291, 8K2B|1|L1|A|292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_009 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.1018

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

8K2B|1|L1|U|284
8K2B|1|L1|G|285
8K2B|1|L1|U|286
8K2B|1|L1|A|287
8K2B|1|L1|G|288
8K2B|1|L1|C|289
8K2B|1|L1|A|290
8K2B|1|L1|A|291
8K2B|1|L1|A|292
8K2B|1|L1|A|293

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LV

39S ribosomal protein L22, mitochondrial

Chain Lh

Large ribosomal subunit protein bL34m