HL_8K2B_042
3D structure
- PDB id
- 8K2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACUUACACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2B_042 not in the Motif Atlas
- Geometric match to HL_5T83_002
- Geometric discrepancy: 0.241
- The information below is about HL_5T83_002
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Guanidine riboswitch aptamer P2 hairpin
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8K2B|1|L2|A|1630
8K2B|1|L2|C|1631
8K2B|1|L2|U|1632
8K2B|1|L2|U|1633
8K2B|1|L2|A|1634
8K2B|1|L2|C|1635
8K2B|1|L2|A|1636
8K2B|1|L2|C|1637
8K2B|1|L2|U|1638
Current chains
- Chain L2
- Val tRNA
Nearby chains
- Chain L5
- Large ribosomal subunit protein mL55
- Chain LR
- Mitochondrial ribosomal protein L18, isoform CRA_b
- Chain La
- Large ribosomal subunit protein bL27m
- Chain Ll
- Large ribosomal subunit protein mL38
- Chain Ln
- Large ribosomal subunit protein mL40
- Chain Lt
- Large ribosomal subunit protein mL46
- Chain Lv
- Large ribosomal subunit protein mL48
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