HL_8K2D_020

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8K2D|1|C1|U|879, 8K2D|1|C1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0863

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8K2D|1|C1|A|876
8K2D|1|C1|C|877
8K2D|1|C1|G|878
8K2D|1|C1|U|879
8K2D|1|C1|G|880
8K2D|1|C1|C|881
8K2D|1|C1|A|882
8K2D|1|C1|A|883
8K2D|1|C1|A|884
8K2D|1|C1|U|885

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22A

Chain Lj

Large ribosomal subunit protein eL37A