HL_8K2D_024

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8K2D|1|C1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1484

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8K2D|1|C1|C|1076
8K2D|1|C1|U|1077
8K2D|1|C1|U|1078
8K2D|1|C1|A|1079
8K2D|1|C1|A|1080
8K2D|1|C1|U|1081
8K2D|1|C1|U|1082
8K2D|1|C1|G|1083

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29