HL_8K2D_046

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

8K2D|1|C1|A|2138, 8K2D|1|C1|A|2139, 8K2D|1|C1|U|2140, 8K2D|1|C1|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_046 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0887

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8K2D|1|C1|U|2135
8K2D|1|C1|C|2136
8K2D|1|C1|U|2137
8K2D|1|C1|A|2138
8K2D|1|C1|A|2139
8K2D|1|C1|U|2140
8K2D|1|C1|U|2141
8K2D|1|C1|A|2142
8K2D|1|C1|A|2143
8K2D|1|C1|A|2144
8K2D|1|C1|A|2145

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain Lj

Large ribosomal subunit protein eL37A