HL_8K2D_062

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8K2D|1|C1|U|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_062 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2019

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8K2D|1|C1|C|2840
8K2D|1|C1|G|2841
8K2D|1|C1|U|2842
8K2D|1|C1|U|2843
8K2D|1|C1|C|2844
8K2D|1|C1|A|2845
8K2D|1|C1|U|2846
8K2D|1|C1|A|2847
8K2D|1|C1|G|2848

Current chains

Chain C1

23S rRNA

Nearby chains

Chain CD

Elongation factor 2

Chain LI

Large ribosomal subunit protein uL16

Chain Lm

Ubiquitin-ribosomal protein eL40A fusion protein