HL_8K2D_099
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8K2D|1|C2|G|1243, 8K2D|1|C2|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2D_099 not in the Motif Atlas
- Homologous match to HL_8C3A_218
- Geometric discrepancy: 0.2673
- The information below is about HL_8C3A_218
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_81538.1
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8K2D|1|C2|A|1238
8K2D|1|C2|U|1239
8K2D|1|C2|U|1240
8K2D|1|C2|G|1241
8K2D|1|C2|A|1242
8K2D|1|C2|G|1243
8K2D|1|C2|A|1244
8K2D|1|C2|G|1245
8K2D|1|C2|C|1246
8K2D|1|C2|U|1247
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain Sd
- Small ribosomal subunit protein uS14A
- Chain Sf
- Ubiquitin-ribosomal protein eS31 fusion protein
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