HL_8KIE_002

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8KIE|1|a|A|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8KIE_002 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0656

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8KIE|1|a|A|1751
8KIE|1|a|G|1752
8KIE|1|a|A|1753
8KIE|1|a|G|1754
8KIE|1|a|A|1755
8KIE|1|a|A|1756
8KIE|1|a|U|1757

Current chains

Chain a

23S rRNA (partial)

Nearby chains