HL_8OI5_088
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 8OI5|1|AS|U|687, 8OI5|1|AS|A|689
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OI5_088 not in the Motif Atlas
- Homologous match to HL_8C3A_015
- Geometric discrepancy: 0.0542
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OI5|1|AS|G|684
8OI5|1|AS|U|685
8OI5|1|AS|G|686
8OI5|1|AS|U|687
8OI5|1|AS|A|688
8OI5|1|AS|A|689
8OI5|1|AS|A|690
8OI5|1|AS|A|691
8OI5|1|AS|C|692
Current chains
- Chain AS
- 25S
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AY
- 60S ribosomal protein L4-B
- Chain BG
- 60S ribosomal protein L13
- Chain BI
- 60S ribosomal protein L15-A
- Chain BT
- Ribosomal protein L24
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