HL_8OI5_130

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_130 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.0717

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OI5|1|AS|C|2812
8OI5|1|AS|G|2813
8OI5|1|AS|U|2814
8OI5|1|AS|U|2815
8OI5|1|AS|C|2816
8OI5|1|AS|A|2817
8OI5|1|AS|U|2818
8OI5|1|AS|A|2819
8OI5|1|AS|G|2820

Current chains

Chain AS

25S

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain BE

60S ribosomal protein L10

Chain CH

60S ribosomal protein L40-B