HL_8OI5_161

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_161 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.0727

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OI5|1|B|A|518
8OI5|1|B|A|519
8OI5|1|B|U|520
8OI5|1|B|G|521
8OI5|1|B|U|522
8OI5|1|B|A|523
8OI5|1|B|A|524
8OI5|1|B|A|525
8OI5|1|B|U|526
8OI5|1|B|A|527
8OI5|1|B|C|528
8OI5|1|B|C|529
8OI5|1|B|U|530

Current chains

Chain B

18S

Nearby chains

Chain L

Ribosomal protein S4

Chain a

40S ribosomal protein S24