HL_8OI5_166

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_166 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.0548

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8OI5|1|B|A|885
8OI5|1|B|G|886
8OI5|1|B|G|887
8OI5|1|B|U|888
8OI5|1|B|G|889
8OI5|1|B|A|890
8OI5|1|B|A|891
8OI5|1|B|A|892
8OI5|1|B|U|893
8OI5|1|B|U|894

Current chains

Chain B

18S

Nearby chains

Chain Q

40S ribosomal protein S14-A

Chain c

40S ribosomal protein S26