HL_8OI5_168

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8OI5|1|B|U|989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_168 not in the Motif Atlas

Homologous match to HL_8C3A_213

Geometric discrepancy: 0.076

The information below is about HL_8C3A_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8OI5|1|B|G|982
8OI5|1|B|A|983
8OI5|1|B|U|984
8OI5|1|B|C|985
8OI5|1|B|A|986
8OI5|1|B|G|987
8OI5|1|B|A|988
8OI5|1|B|U|989
8OI5|1|B|A|990
8OI5|1|B|C|991
8OI5|1|B|C|992

Current chains

Chain B

18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S14-A

Chain c

40S ribosomal protein S26