HL_8OI5_197

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUAGCCAUUUAUGGCGAAC

Length

20 nucleotides

Bulged bases

8OI5|1|CM|U|703, 8OI5|1|CM|U|709, 8OI5|1|CM|U|711, 8OI5|1|CM|A|712, 8OI5|1|CM|U|713, 8OI5|1|CM|G|717, 8OI5|1|CM|A|718

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_197 not in the Motif Atlas

Homologous match to HL_8C3A_207

Geometric discrepancy: 0.1104

The information below is about HL_8C3A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56845.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8OI5|1|CM|G|701
8OI5|1|CM|G|702
8OI5|1|CM|U|703
8OI5|1|CM|A|704
8OI5|1|CM|G|705
8OI5|1|CM|C|706
8OI5|1|CM|C|707
8OI5|1|CM|A|708
8OI5|1|CM|U|709
8OI5|1|CM|U|710
8OI5|1|CM|U|711
8OI5|1|CM|A|712
8OI5|1|CM|U|713
8OI5|1|CM|G|714
8OI5|1|CM|G|715
8OI5|1|CM|C|716
8OI5|1|CM|G|717
8OI5|1|CM|A|718
8OI5|1|CM|A|719
8OI5|1|CM|C|720

Current chains

Chain CM

18S

Nearby chains

Chain CT

40S ribosomal protein S6