HL_8OI5_198

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8OI5|1|CM|G|750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_198 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.0584

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8OI5|1|CM|U|749
8OI5|1|CM|G|750
8OI5|1|CM|U|751
8OI5|1|CM|U|752
8OI5|1|CM|C|753
8OI5|1|CM|A|754
8OI5|1|CM|A|755
8OI5|1|CM|A|756
8OI5|1|CM|G|757

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CW

Ribosomal protein S4

Chain DL

40S ribosomal protein S24