HL_8OI5_208

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8OI5|1|CM|G|1228, 8OI5|1|CM|G|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_208 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.0596

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8OI5|1|CM|A|1223
8OI5|1|CM|U|1224
8OI5|1|CM|U|1225
8OI5|1|CM|G|1226
8OI5|1|CM|A|1227
8OI5|1|CM|G|1228
8OI5|1|CM|A|1229
8OI5|1|CM|G|1230
8OI5|1|CM|C|1231
8OI5|1|CM|U|1232

Current chains

Chain CM

18S

Nearby chains

Chain DC

40S ribosomal protein S15

Chain DQ

40S ribosomal protein S29A