HL_8OIN_011
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GA(5MU)UAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8OIN|1|AA|U|433
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OIN_011 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.1033
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8OIN|1|AA|G|426
8OIN|1|AA|A|427
8OIN|1|AA|5MU|428
8OIN|1|AA|U|429
8OIN|1|AA|A|430
8OIN|1|AA|G|431
8OIN|1|AA|A|432
8OIN|1|AA|U|433
8OIN|1|AA|A|434
8OIN|1|AA|C|435
8OIN|1|AA|C|436
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AF
- Mitochondrial ribosomal protein S7
- Chain AG
- P-site Met-tRNA(fMet)
- Chain AI
- mRNA
- Chain Ai
- Mitochondrial ribosomal protein S11
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: