HL_8OIN_013

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAACUG

Length

6 nucleotides

Bulged bases

8OIN|1|AA|A|502, 8OIN|1|AA|U|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_013 not in the Motif Atlas

Geometric match to HL_6TQA_003

Geometric discrepancy: 0.2927

The information below is about HL_6TQA_003

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

8OIN|1|AA|C|501
8OIN|1|AA|A|502
8OIN|1|AA|A|503
8OIN|1|AA|C|504
8OIN|1|AA|U|505
8OIN|1|AA|G|506

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AL

28S ribosomal protein S15, mitochondrial

Chain B8

Large subunit ribosomal RNA; LSU rRNA