HL_8OIN_032

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUGGCAAAA

Length

10 nucleotides

Bulged bases

8OIN|1|B8|G|294, 8OIN|1|B8|A|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_032 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.1739

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

8OIN|1|B8|U|291
8OIN|1|B8|G|292
8OIN|1|B8|U|293
8OIN|1|B8|G|294
8OIN|1|B8|G|295
8OIN|1|B8|C|296
8OIN|1|B8|A|297
8OIN|1|B8|A|298
8OIN|1|B8|A|299
8OIN|1|B8|A|300

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BA

uL22m

Chain BJ

Mitochondrial ribosomal protein L34

Chain BM

ICT1

Chain Bu

Mitochondrial ribosomal protein L45