HL_8OIN_039

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_039 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.148

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OIN|1|B8|C|536
8OIN|1|B8|G|537
8OIN|1|B8|U|538
8OIN|1|B8|U|539
8OIN|1|B8|A|540
8OIN|1|B8|A|541
8OIN|1|B8|A|542
8OIN|1|B8|G|543

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BQ

Mitochondrial ribosomal protein L11

Chain Bc

mL54