HL_8OIR_013

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

8OIR|1|AA|C|504, 8OIR|1|AA|A|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIR_013 not in the Motif Atlas

Geometric match to HL_6TQA_003

Geometric discrepancy: 0.2319

The information below is about HL_6TQA_003

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

8OIR|1|AA|C|503
8OIR|1|AA|C|504
8OIR|1|AA|A|505
8OIR|1|AA|C|506
8OIR|1|AA|A|507
8OIR|1|AA|G|508

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A-interacting protein

Chain AL

28S ribosomal protein S15, mitochondrial

Chain B8

Large subunit ribosomal RNA; LSU rRNA