HL_8OJ5_022

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8OJ5|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ5_022 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3749

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8OJ5|1|5|C|1816
8OJ5|1|5|U|1817
8OJ5|1|5|G|1818
8OJ5|1|5|G|1819
8OJ5|1|5|C|1820
8OJ5|1|5|G|1821
8OJ5|1|5|U|1822
8OJ5|1|5|G|1823

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29