HL_8OVE_007
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUGACUC
- Length
- 8 nucleotides
- Bulged bases
- 8OVE|1|AA|U|343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_007 not in the Motif Atlas
- Homologous match to HL_8C3A_197
- Geometric discrepancy: 0.3055
- The information below is about HL_8C3A_197
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8OVE|1|AA|G|337
8OVE|1|AA|U|338
8OVE|1|AA|U|339
8OVE|1|AA|G|340
8OVE|1|AA|A|341
8OVE|1|AA|C|342
8OVE|1|AA|U|343
8OVE|1|AA|C|344
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain A3
- 40S ribosomal protein S6
- Chain AE
- 40S ribosomal proteins S11, putative
Coloring options: