HL_8OVE_038

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCGUCACCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_038 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.3043

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OVE|1|AA|C|2176
8OVE|1|AA|C|2177
8OVE|1|AA|G|2178
8OVE|1|AA|U|2179
8OVE|1|AA|C|2180
8OVE|1|AA|A|2195
8OVE|1|AA|C|2196
8OVE|1|AA|C|2197
8OVE|1|AA|G|2198

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A3

40S ribosomal protein S6

Chain BH

SrRNA 4