HL_8OVE_079
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- U(A2M)UAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8OVE|1|BB|A|402, 8OVE|1|BB|A|403, 8OVE|1|BB|U|404, 8OVE|1|BB|A|408
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_079 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.2837
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8OVE|1|BB|U|399
8OVE|1|BB|A2M|400
8OVE|1|BB|U|401
8OVE|1|BB|A|402
8OVE|1|BB|A|403
8OVE|1|BB|U|404
8OVE|1|BB|U|405
8OVE|1|BB|A|406
8OVE|1|BB|A|407
8OVE|1|BB|A|408
8OVE|1|BB|A|409
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bn
- Ribosomal protein L37
Coloring options: