HL_8OVE_083

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCCAAUUAG

Length

9 nucleotides

Bulged bases

8OVE|1|BB|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_083 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0969

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OVE|1|BB|U|556
8OVE|1|BB|C|557
8OVE|1|BB|C|558
8OVE|1|BB|A|559
8OVE|1|BB|A|560
8OVE|1|BB|U|561
8OVE|1|BB|U|562
8OVE|1|BB|A|563
8OVE|1|BB|G|564

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BW

60S ribosomal protein L23, putative