HL_8OVE_095

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8OVE|1|BB|U|1296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_095 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2255

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OVE|1|BB|C|1294
8OVE|1|BB|G|1295
8OVE|1|BB|U|1296
8OVE|1|BB|U|1297
8OVE|1|BB|C|1298
8OVE|1|BB|A|1299
8OVE|1|BB|U|1300
8OVE|1|BB|A|1301
8OVE|1|BB|G|1302

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BK

60S ribosomal protein L10, putative

Chain Bs

Ubiquitin-60S ribosomal protein L40