HL_8OVE_120
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- (A2M)CGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8OVE|1|BA|U|999, 8OVE|1|BA|A|1003, 8OVE|1|BA|A|1004
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_120 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.093
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BA|A2M|996
8OVE|1|BA|C|997
8OVE|1|BA|G|998
8OVE|1|BA|U|999
8OVE|1|BA|G|1000
8OVE|1|BA|C|1001
8OVE|1|BA|A|1002
8OVE|1|BA|A|1003
8OVE|1|BA|A|1004
8OVE|1|BA|U|1005
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BR
- 60S ribosomal protein L17, putative
- Chain Bf
- Ribosomal protein L3, mitochondrial, putative
- Chain Bn
- Ribosomal protein L37
Coloring options: