HL_8OZ0_027

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8OZ0|1|W|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OZ0_027 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1964

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8OZ0|1|W|A|1295
8OZ0|1|W|U|1296
8OZ0|1|W|U|1297
8OZ0|1|W|G|1298
8OZ0|1|W|A|1299
8OZ0|1|W|U|1300
8OZ0|1|W|A|1301
8OZ0|1|W|G|1302
8OZ0|1|W|C|1303
8OZ0|1|W|U|1304

Current chains

Chain W

18S rRNA

Nearby chains

Chain j

40S ribosomal protein S15

Chain o

40S ribosomal protein S29

Chain p

Ubiquitin-40S ribosomal protein S27a