HL_8OZ0_029

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8OZ0|1|W|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OZ0_029 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1366

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8OZ0|1|W|G|1366
8OZ0|1|W|U|1367
8OZ0|1|W|U|1368
8OZ0|1|W|A|1369
8OZ0|1|W|A|1370
8OZ0|1|W|U|1371
8OZ0|1|W|U|1372
8OZ0|1|W|C|1373

Current chains

Chain W

18S rRNA

Nearby chains

Chain v

40S ribosomal protein S17