HL_8P4V_080

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8P4V|1|A|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_080 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.1255

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8P4V|1|A|G|243
8P4V|1|A|A|244
8P4V|1|A|U|245
8P4V|1|A|G|246
8P4V|1|A|A|247
8P4V|1|A|U|248
8P4V|1|A|U|249
8P4V|1|A|C|250

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain M

40S ribosomal protein S11-A